Frequency of nucleotides and oligonucleotides in a sequence
This demo is limited to oligos 1-3 bases long, and a maximum input sequence of 10000 bp.
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(non coding characters, as number, returns or spaces will be removed)
ACCGGATGGCCGCGATTTTTTTTACCCTGGTCCCCACCACACGCACTAACGGACAAATAC ACGTGGACCAATGAAATTG GCTCCTCATCGCTAAATTATTAAATGGTCCCCTATT TAAACTTGGTCCCCAAGTAGTGCACACCAACCAATGTGGGATC CATTAGTAAACG AGTTCCCCGAAACCGTTCACGGTTTTAGGTGTATGCTTGCTATCAAATATCTGCAGTTGG TAGAAAA TACGTATTCCCCTGATTCATTGGGATACGACTTGATACGAGAATTAAT ATCCGTTATTAGAGCGAAAAACTATGTCCAA GCGTCCAGCAGATATGATCATTTC CGCGCCCGTCTCGAAGTATCGTCGACTGCTGACCTCAACCAGCCCATACAGCAAG CGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGTCAACAGGCCCACC AATCGGAAGCCGATGTTTT ACAGAATGTACAGAAGTCCTGATGTCCCCACAGGGT GTGAGGGTCCATGTAAGGTTCAGTCTTTTGAGTCTAGACACGA TGTCGTTCATAT AGGTAAGGTCATGTGTATTAGTGATGTTACCCGCGGTACTGGGTTAACCCATAGGGTAGG TAAGCGT TTTTGTGTTAAGTCCGTGTATGTATTAGGCAAAATATGGATGGATGAG AATATCAAAACGAAGAATCACACGAACAGTG TGATGTTCTTCCTCGTCCGTGATC GTCGCCCTGTTGATAAACCACAAGATTTTGGAGAGGTCTTCAACATGTTTGACAA CGAGCCTAGCACTGCAACTGTGAAGAATATGCATAGGGGGTACCAGGTGTTGCGGAAGTG GCATGCAACCGTCACTGGT GGACAATATGCGTCGAAGGAACAGGCCTTAGTGAAG AAGTTTGTTAGGGTTAACAATTATGTTGTTTATAACCAGCAGG AGGCTGGGAAAT ATGAAAACCACACGGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCTAACC CTGTGTA TGCTACGCTTAAGATTCGTATCTACTTTTACGACTCTGTACAACGAAA TTAATAAATGTTGAATTTTATTATGTGTGAA CTTTGTACATAAACTGTTTGGGCT AATACATTCCATAATACATGGTCCACAGCTCGAATTACATTGTTTATGGAAATTA CAGCAAAATTATTAATATATTGCAACACTTGGGTCCTAAATACCCTTAAGAAATGACCAG TCCGAGGCTGTAAGGTCGT CCAGATTCGGAAGGTTAGAAAACACTTGTGTATCCC CAACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGCACGGTG ATGATGTCTCGG TTCCTGAGGAATGGCTTGTTGTGGTGCTCGGTTATCTTGAAATACAGGGGATTTGTTATC TCCCAGA TAAACACGCCATTCTCTGCTTGAGCTGCAGTGATGGGTTCCCCTGTGC GTGAATCCATAGCCGTGGCAGCGTAATGCGA TGAAATATGAGCAGCCGCAATCTA GGTCAACGCGACGACGCCGGGTCCCCTTCTTGGCCAGCCTGTGCTGCACTTTGAT TGGAACCTGAGTAGAGTGGGCCTGTGAGGGTGATGAAGGTCGCATTCTTTAAAGCCCAAT GTTTGAGTGCGGAATTCTT CTCTTCATCCAAGAACTCTTTATAGCTGGAATTGGG TCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATT TGAACTGGCTTT CCGTATTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTT AGATAAT GCGGATCAACGTCATCAATGACGTTATACCAAGCATCATTGCTGTACA CTTTAGGGCTGAGGTCTAAGTGACCACATAG GTAGTTATGTGGACCCAAAGACCT AGCCCACATGGTCTTGCCAGTCCTACTATCACCCTCAATCACAATACTCATGGGT CTCAAAGGCCGCGCAGCGGCACCCATCACGTTCTCAGAAGCCCAGTCTTCAAGTTCTGCC GGAACTTGATCGAAAGAAG AAGATAGAAAAGGAGATACATAAACCTCCGGTGGAG GTGTAAAAATCCTATCTAAATTAGAATTTAAATTATGAAATTG TAAAACATAATC TTTTGGAGCTTTCTCCCTTAAAATATTGAGGGCCGAAGACTTGGACCCTGAATTGATTGC CTCGGCA TATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTGCCATCG ATCTGGAAAACTCCAAAGTCAATGAAGTCTC CGTCTTTCTCCACATAGGCTTTGA CATCTGAAGAGCTCTTAGCTCTCTGAATGTTTGGATGGAAATGTGCTGACCTGGT TGGGGAAATGAGGTCGAAGAATCTGTTGTTTGTGCATTGATATTTCCCCTCGAATTGGAC GAGCACGTGTAGATGAGGT TCCCCATTCTCGTGCAATTCTCTGCAAACCCTAATA AATAATTTATTCACAGGGGTTTGTAAGTTTTGTAATTGGGAAA GTGCCTCTTCTT TAGTGAGAGAGCAGTTGGGATATGTGAGGAAATAATTTTTAGCATTTATATTGAATCTTC CTGTCCT AGGCATATTGGTGGACACTCAAACTTACTATGCAATCGGTGGAATGGT GGACAATATATATGTGTCCACCAATGGCAAA TTGGTAATTACAAAAAATAATTGA AAGTCCGTAAATCGCGGCCATCCGCATTAATATT
Select length of oligonucleotides
1
2
3
4
5
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7
8
*
Compute frequencies in
one strand
both strands
This version does not work with degenerated nucleotides
* when selected length is one, frequency of nucleotides A, C, G and T will be reported.